I had been working on a G16 + Auto convserion in an LJ81 in the background. Would still be working on it if I wasn't fixing my other car.
Anyway, I wanted to keep the centered diffs also, but gave up on the idea because I had a bee in my bonnet about getting the drivetrain as low as possible (offset diff helps for sump clearance). I'm sure it can be done with the centred diffs (Kenn's car is the proof); but I folded and changed to Sierra diffs

.
Either way I doubt retaining the LJ transfer is feasible. Strength is a maybe concern, but also it's location is too far forward for such a long transmission in front of it (if your moving it, may as well replace it I figure). Also if your retaining centred diffs the LJ transfers outputs are very high up; a vertically mounted Sierra transfer can lower the outputs a fair bit, which would help significantly in clearing the auto pan with the front tailshaft.
I can't comment on required body mods, haven't got anywhere near that far yet.
Not sure if it will help you much due to my diff decision, but below is where I had got up to with mine:
Engine in front:

Side On:

Gearbox mount, and transfer, showing original transfer crossmember position also:
